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#	Item
51	OPTIMAL ALGORITHM FOR FINDING DNA MOTIFS WITH NUCLEOTIDE ADJACENT DEPENDENCY∗ FRANCIS Y.L. CHIN HENRY C.M. LEUNG Add to Reading List Source URL: i.cs.hku.hk Language: English - Date: 2008-02-18 04:02:24 Protein domains Gene expression Transcription factors Sequence motif DNA binding site Zinc finger Nucleic acid sequence Short linear motif Suffix tree Biology Bioinformatics DNA
52	An(other) Entropy-Bounded Compressed Suffix Tree Johannes Fischer ¨ Veli Makinen Add to Reading List Source URL: www.cs.ucr.edu Language: English - Date: 2008-06-19 08:50:58 Arrays Suffix array Suffix tree Compressed suffix array Linguistic morphology Trie Entropy Diminutive Computing Computer programming Data management
53	Time-Space Trade-Offs for the Longest Common Substring Problem Tatiana Starikovskaya1 and Hjalte Wedel Vildhøj2 1 Moscow State University, Department of Mechanics and Mathematics, Add to Reading List Source URL: www.cs.ucr.edu Language: English - Date: 2013-07-10 03:07:54 Applied mathematics Combinatorics Longest common subsequence problem Substring Longest common substring problem Suffix tree Dynamic programming Mathematics Theoretical computer science
54	Outline Compressed Text Indexes with Fast Locate ´ 1 and Gonzalo Navarro1 Rodrigo Gonzalez 1 Department Add to Reading List Source URL: www.cs.ucr.edu Language: English - Date: 2007-07-27 14:39:23 Arrays Suffix array Suffix tree Search engine indexing Information science Information retrieval Information
55	Cache-Oblivious Index for Approximate String Matching Add to Reading List Source URL: www.cs.ucr.edu Language: English - Date: 2007-07-27 14:38:02 Analysis of algorithms Cache Computational complexity theory Search algorithms B-tree Trie Cache-oblivious algorithm Suffix tree Time complexity Theoretical computer science Computer science Computing
56	What’s Behind BLAST Gene Myers, Director MPI for Cell Biology and Genetics Dresden, DE Add to Reading List Source URL: www.cs.ucr.edu Language: English - Date: 2014-07-18 16:47:52 Suffix array Combinatorics Suffix tree String searching algorithm String Computing Computer programming Arrays
57	Microsoft PowerPoint - CPM2010.pptx Add to Reading List Source URL: www.cs.ucr.edu Language: English - Date: 2010-08-20 17:45:58 Suffix tree Suffix array Compressed suffix array Search engine indexing Compressed data structure Trie Diminutive Summation Substring index Information science Information retrieval Information
58	Fast Searching in Packed Strings Philip Bille 1 String Matching Add to Reading List Source URL: www.cs.ucr.edu Language: English - Date: 2009-06-21 19:54:26 Computing String Algorithm Suffix tree Knuth–Morris–Pratt algorithm Mathematics Combinatorics String searching algorithm
59	Sampled LCP Array Jouni Sirén / CPM 2010 Faculty of Science / Jouni Sirén / Sampled LCP Array www.helsinki.fi/yliopisto Add to Reading List Source URL: www.cs.ucr.edu Language: English - Date: 2010-08-20 17:45:50 Data management Suffix array Suffix tree Compressed suffix array Bit array Burrows–Wheeler transform Arrays Computing Computer programming
60	Guide to Examinable Material COMS31900 – Advanced AlgorithmsDecember 2013 Overview This guide is organised topic by topic in the same order that the course was taught. References into the lectures are giv Add to Reading List Source URL: www.cs.bris.ac.uk Language: English - Date: 2014-03-11 09:18:17 Applied mathematics Hashing Suffix tree Hash function Hash table Vertex cover Bloom filter Universal hashing Time complexity Theoretical computer science Search algorithms Computational complexity theory

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